From bb2dbf06cc2849cda29fa1106bf3a51b4c15631f Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:21:44 +0200
Subject: [PATCH 01/34] add a category for code quality

---
 copier/questions/features_code_quality.yml | 24 ++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100644 copier/questions/features_code_quality.yml

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
new file mode 100644
index 00000000..57b433e6
--- /dev/null
+++ b/copier/questions/features_code_quality.yml
@@ -0,0 +1,24 @@
+---
+# Questions for code quality features
+SelectCodeQualityFeatures:
+  when: "{{ template_profile != 'minimum' }}"
+  type: str
+  default: []
+  help: Select code quality features
+  multiselect: true
+  choices:
+    GitHub Actions:
+      value: select_github_actions_flag
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Linting (using ruff NOT_IMPLEMENTED):
+      value: not_implemented_linting
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Pre-commit:
+      value: AddPreCommit
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Code analysis (using SonarCloud):
+      value: AddSonarCloud
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Editorconfig (NOT_IMPLEMENTED):
+      value: not_implemented_editor_config
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"

From 7282976a91f685647e95dfe639769034aede14e6 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:22:22 +0200
Subject: [PATCH 02/34] make category type yaml

---
 copier/questions/features_code_quality.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index 57b433e6..3fc72763 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -2,7 +2,7 @@
 # Questions for code quality features
 SelectCodeQualityFeatures:
   when: "{{ template_profile != 'minimum' }}"
-  type: str
+  type: yaml
   default: []
   help: Select code quality features
   multiselect: true

From e7a3d73d1ddba71d9ee8b6e53e12bcd2db1a80e1 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:23:09 +0200
Subject: [PATCH 03/34] add a list of pre-selected features for recommended
 profile

---
 copier/questions/features_code_quality.yml | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index 3fc72763..3d330cd8 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -3,7 +3,12 @@
 SelectCodeQualityFeatures:
   when: "{{ template_profile != 'minimum' }}"
   type: yaml
-  default: []
+  default: |-
+    {% if template_profile == 'recommended' %}
+      [select_github_actions_flag, not_implemented_linting, AddSonarCloud, not_implemented_editor_config]
+    {%- else -%}
+      []
+    {%- endif %}
   help: Select code quality features
   multiselect: true
   choices:

From da8e2368ddd0788d453ad8fbab322e0be09a0c48 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:25:54 +0200
Subject: [PATCH 04/34] add a sub-menu to select GitHub Actions

---
 copier/questions/features_code_quality.yml | 23 ++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index 3d330cd8..f26b9000 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -27,3 +27,26 @@ SelectCodeQualityFeatures:
     Editorconfig (NOT_IMPLEMENTED):
       value: not_implemented_editor_config
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+
+# split AddGitHubActions --> enable_github_actions_build and enable_github_actions_documentation
+SelectGitHubActions:
+  when: "{{ 'select_github_actions_flag' in SelectCodeQualityFeatures }}"
+  type: yaml
+  default: |-
+    {% if template_profile == 'recommended' %}
+      [not_implemented_enable_github_actions_build, not_implemented_enable_github_actions_documentation]
+    {%- else -%}
+      []
+    {%- endif %}
+  help: Select GitHub Action workflows
+  multiselect: true
+  choices:
+    Build (NOT_IMPLEMENTED):
+      value: not_implemented_enable_github_actions_build
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Documentation (NOT_IMPLEMENTED):
+      value: not_implemented_enable_github_actions_documentation
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Link checker (reports broken URLs):
+      value: AddLinkCheck
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"

From fd4ec0174e347f0fd24f465919e4319a5069b745 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:33:05 +0200
Subject: [PATCH 05/34] remove code quality questions from
 questions/features.yml

---
 copier/questions/features.yml | 25 -------------------------
 1 file changed, 25 deletions(-)

diff --git a/copier/questions/features.yml b/copier/questions/features.yml
index c5c6e185..a6aca098 100644
--- a/copier/questions/features.yml
+++ b/copier/questions/features.yml
@@ -5,21 +5,6 @@ addExtraFeatures:
   default: yes
   help: Do you want to add extra features?
   when: "{{ template_profile == 'ask' }}"
-AddLinkCheck:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Do you want to add a GitHub action to check broken links?
-AddGitHubActions:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Do you want to add GitHub actions to test the package and the documentation?
-AddCitation:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Citation file and cffconvert workflow which validates the citation file
 AddChangeLog:
   when: "{{ template_profile == 'ask' }}"
   type: bool
@@ -30,21 +15,11 @@ AddOnlineDocumentation:
   type: bool
   default: "{{ template_profile != 'minimum' }}"
   help: Online documentation using Read the Docs
-AddPreCommit:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Add pre-commit hook to check code style and format on every commit?
 AddZenodo:
   when: "{{ template_profile == 'ask' }}"
   type: bool
   default: "{{ template_profile != 'minimum' }}"
   help: Create a GitHub issue on how to enable Zenodo integration?
-AddSonarCloud:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Add SonarCloud (code analysis service) integration?
 AddCodeConduct:
   when: "{{ template_profile == 'ask' }}"
   type: bool

From f1dab0df83b762b5fd6cb16eae16d3dace623a02 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:37:20 +0200
Subject: [PATCH 06/34] add TODO for AddGitHubActions

---
 copier/questions/features_code_quality.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index f26b9000..cd6747ea 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -28,7 +28,7 @@ SelectCodeQualityFeatures:
       value: not_implemented_editor_config
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
 
-# split AddGitHubActions --> enable_github_actions_build and enable_github_actions_documentation
+# TODO: split AddGitHubActions --> enable_github_actions_build and enable_github_actions_documentation
 SelectGitHubActions:
   when: "{{ 'select_github_actions_flag' in SelectCodeQualityFeatures }}"
   type: yaml

From 0672cbbb34c816f88f9f6bd11140f8bc366e67bc Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:46:57 +0200
Subject: [PATCH 07/34] add a category for documentation

---
 copier/questions/features.yml               |  5 ----
 copier/questions/features_documentation.yml | 26 +++++++++++++++++++++
 2 files changed, 26 insertions(+), 5 deletions(-)
 create mode 100644 copier/questions/features_documentation.yml

diff --git a/copier/questions/features.yml b/copier/questions/features.yml
index a6aca098..a5a8ffb2 100644
--- a/copier/questions/features.yml
+++ b/copier/questions/features.yml
@@ -30,8 +30,3 @@ AddContributing:
   type: bool
   default: "{{ template_profile != 'minimum' }}"
   help: Add contributing guidelines?
-AddDevDoc:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Add developer documentation?
diff --git a/copier/questions/features_documentation.yml b/copier/questions/features_documentation.yml
new file mode 100644
index 00000000..fd9f535d
--- /dev/null
+++ b/copier/questions/features_documentation.yml
@@ -0,0 +1,26 @@
+---
+# Questions for documentation features
+SelectDocumentationFeatures:
+  when: "{{ template_profile != 'minimum' }}"
+  type: yaml
+  default: |-
+    {% if template_profile == 'recommended' %}
+      [AddOnlineDocumentation, AddDevDoc, not_implemented_project_setup]
+    {%- else -%}
+      []
+    {%- endif %}
+  help: Select documentation features
+  multiselect: true
+  choices:
+    Online documentation (using Read the Docs):
+      value: AddOnlineDocumentation
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Developer documentation:
+      value: AddDevDoc
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Project setup description (NOT_IMPLEMENTED):
+      value: not_implemented_project_setup
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Markdown link checker GitHub Action (NOT_IMPLEMENTED):
+      value: not_implemented_markdown_link_checker
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"

From b27e12221208e9f8715bc78a9fb681bf77a72064 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:49:24 +0200
Subject: [PATCH 08/34] add a category for community

---
 copier/questions/features_community.yml | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)
 create mode 100644 copier/questions/features_community.yml

diff --git a/copier/questions/features_community.yml b/copier/questions/features_community.yml
new file mode 100644
index 00000000..c30edf6b
--- /dev/null
+++ b/copier/questions/features_community.yml
@@ -0,0 +1,20 @@
+---
+# Questions for community features
+SelectCommunityFeatures:
+  when: "{{ template_profile != 'minimum' }}"
+  type: yaml
+  default: |-
+    {% if template_profile == 'recommended' %}
+      [AddCodeConduct, AddContributing]
+    {%- else -%}
+      []
+    {%- endif %}
+  help: Select documentation features
+  multiselect: true
+  choices:
+    Code of conduct:
+      value: AddCodeConduct
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Contributing guidelines:
+      value: AddContributing
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"

From 0e6e210553aa975a0d10cfbcf3119b65a1e4a71b Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:55:08 +0200
Subject: [PATCH 09/34] add a category for publish and release

---
 copier/questions/features.yml                 | 32 -------------
 copier/questions/features_publish_release.yml | 47 +++++++++++++++++++
 2 files changed, 47 insertions(+), 32 deletions(-)
 delete mode 100644 copier/questions/features.yml
 create mode 100644 copier/questions/features_publish_release.yml

diff --git a/copier/questions/features.yml b/copier/questions/features.yml
deleted file mode 100644
index a5a8ffb2..00000000
--- a/copier/questions/features.yml
+++ /dev/null
@@ -1,32 +0,0 @@
----
-# Questions for features
-addExtraFeatures:
-  type: bool
-  default: yes
-  help: Do you want to add extra features?
-  when: "{{ template_profile == 'ask' }}"
-AddChangeLog:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Add a change log to keep track of changes in the package
-AddOnlineDocumentation:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Online documentation using Read the Docs
-AddZenodo:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Create a GitHub issue on how to enable Zenodo integration?
-AddCodeConduct:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Add code of conduct?
-AddContributing:
-  when: "{{ template_profile == 'ask' }}"
-  type: bool
-  default: "{{ template_profile != 'minimum' }}"
-  help: Add contributing guidelines?
diff --git a/copier/questions/features_publish_release.yml b/copier/questions/features_publish_release.yml
new file mode 100644
index 00000000..bc9a331b
--- /dev/null
+++ b/copier/questions/features_publish_release.yml
@@ -0,0 +1,47 @@
+---
+# Questions for publishing and releasing features
+SelectPublishReleaseFeatures:
+  when: "{{ template_profile != 'minimum' }}"
+  type: yaml
+  default: |-
+    {% if template_profile == 'recommended' %}
+      [select_citation_flag, AddZenodo]
+    {%- else -%}
+      []
+    {%- endif %}
+  help: Select publish and release features
+  multiselect: true
+  choices:
+    Citation:
+      value: select_citation_flag
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Changelog:
+      value: AddChangeLog
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Zenodo integration instructions:
+      value: AddZenodo
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    Package keywords(NOT_IMPLEMENTED):
+      value: not_implemented_keywords
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+
+
+# split AddCitation --> enable_citation_file and enable_cffconvert
+SelectCitation:
+  when: "{{ 'select_citation_flag' in SelectPublishReleaseFeatures }}"
+  type: yaml
+  default: |-
+    {% if template_profile == 'recommended' %}
+      [enable_citation_file, enable_cffconvert]
+    {%- else -%}
+      []
+    {%- endif %}
+  help: Select GitHub Action workflows
+  multiselect: true
+  choices:
+    CITATION.cff file (NOT_IMPLEMENTED):
+      value: enable_citation_file
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+    cffconvert GitHub Action (NOT_IMPLEMENTED):
+      value: enable_cffconvert
+      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"

From 3f9542ed0d3d9206c3eea4eb5197f5769c94f0dc Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 21:58:01 +0200
Subject: [PATCH 10/34] include feature yaml file in copier.yml

---
 copier.yml | 16 ++++++++++++++--
 1 file changed, 14 insertions(+), 2 deletions(-)

diff --git a/copier.yml b/copier.yml
index c6ac62f5..398a557d 100644
--- a/copier.yml
+++ b/copier.yml
@@ -15,8 +15,20 @@
 !include copier/questions/package_details.yml
 
 ---
-# Features
-!include copier/questions/features.yml
+# code quality
+!include copier/questions/features_code_quality.yml
+
+---
+# publish and release
+!include copier/questions/features_publish_release.yml
+
+---
+# publish and release
+!include copier/questions/features_documentation.yml
+
+---
+# community
+!include copier/questions/features_community.yml
 
 ---
 # User messages

From c8ddd59ead7a39105f08ec0aa16aa67def254803 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 22:01:38 +0200
Subject: [PATCH 11/34] add a validator for package version

---
 copier/questions/essential.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/copier/questions/essential.yml b/copier/questions/essential.yml
index 92db3154..ba047e75 100644
--- a/copier/questions/essential.yml
+++ b/copier/questions/essential.yml
@@ -12,6 +12,10 @@ version:
   type: str
   placeholder: 0.1.0
   help: Enter the version of the Python package
+  validator: >-
+        {% if not (package_name | regex_search('^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+([0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$')) %}
+        Package version should use Semantic Versioning 2.0.0 (MAJOR.MINOR.PATCH)
+        {% endif %}
 license:
   type: str
   choices:

From 2662932cefe376560889a56c6667ad861cd30623 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 22:03:35 +0200
Subject: [PATCH 12/34] make full name an essential question

---
 copier/questions/essential.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/copier/questions/essential.yml b/copier/questions/essential.yml
index ba047e75..8bd1bd2a 100644
--- a/copier/questions/essential.yml
+++ b/copier/questions/essential.yml
@@ -16,6 +16,10 @@ version:
         {% if not (package_name | regex_search('^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+([0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$')) %}
         Package version should use Semantic Versioning 2.0.0 (MAJOR.MINOR.PATCH)
         {% endif %}
+full_name:
+  type: str
+  placeholder: Jane Smith
+  help: Enter your full name
 license:
   type: str
   choices:

From d8f98d925907ac75b5f0aba729e22107324174a8 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 22:04:47 +0200
Subject: [PATCH 13/34] update help text and condition for package detail
 questions

---
 copier/questions/package_details.yml | 21 ++++++++-------------
 1 file changed, 8 insertions(+), 13 deletions(-)

diff --git a/copier/questions/package_details.yml b/copier/questions/package_details.yml
index ce93c7e2..301a5495 100644
--- a/copier/questions/package_details.yml
+++ b/copier/questions/package_details.yml
@@ -8,43 +8,38 @@ AddPackageDetails:
 package_short_description:
   type: str
   placeholder: Short description
-  help: Provide a short description of package.
+  help: Short description of package
   when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
 keyword1:
   type: str
   placeholder: keyword1
   help: Add keyword1
-  when: "{{ template_profile != 'minimum'  and AddPackageDetails }}"
+  when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
 keyword2:
   type: str
   placeholder: keyword2
   help: Add keyword2
-  when: "{{ template_profile != 'minimum'  and AddPackageDetails }}"
+  when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
 github_organization:
   type: str
   placeholder: "<my-github-organization>"
   help: Enter the name of your GitHub username or organization
-  when: "{{ template_profile != 'minimum'  and AddPackageDetails }}"
-full_name:
-  type: str
-  placeholder: Jane Smith
-  help: Enter your full name
-  when: "{{ template_profile != 'minimum'  and AddPackageDetails }}"
+  when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
 email:
   type: str
   placeholder: yourname@esciencecenter.nl
   help: What is your email address?
-  when: "{{ template_profile != 'minimum'  and AddPackageDetails }}"
+  when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
 code_of_conduct_email:
   type: str
   placeholder: yourname@esciencecenter.nl
-  help: What is the email address of code of conduct?
-  when: "{{ template_profile != 'minimum'  and AddPackageDetails }}"
+  help: What is the  email address cor code of conduct?
+  when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
 copyright_holder:
   type: str
   placeholder: Netherlands eScience Center
   help: Who is the copyright holder?
-  when: "{{ template_profile != 'minimum'  and AddPackageDetails }}"
+  when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
 
 # calculated fields for GitHub
 repository:

From 7fd5c175c3ac9d07abbbf271daa14d04b4faf5da Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 22:09:14 +0200
Subject: [PATCH 14/34] fix the version validator

---
 copier/questions/essential.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/copier/questions/essential.yml b/copier/questions/essential.yml
index 8bd1bd2a..f4e2e9ea 100644
--- a/copier/questions/essential.yml
+++ b/copier/questions/essential.yml
@@ -13,7 +13,7 @@ version:
   placeholder: 0.1.0
   help: Enter the version of the Python package
   validator: >-
-        {% if not (package_name | regex_search('^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+([0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$')) %}
+        {% if not (version | regex_search('^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+([0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$')) %}
         Package version should use Semantic Versioning 2.0.0 (MAJOR.MINOR.PATCH)
         {% endif %}
 full_name:

From cafb6500716621b4da33f01425f2eefbfcabf33b Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Fri, 23 Aug 2024 22:17:08 +0200
Subject: [PATCH 15/34] use a default value for version

---
 copier/questions/essential.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/copier/questions/essential.yml b/copier/questions/essential.yml
index f4e2e9ea..6171d574 100644
--- a/copier/questions/essential.yml
+++ b/copier/questions/essential.yml
@@ -10,7 +10,7 @@ package_name:
         {% endif %}
 version:
   type: str
-  placeholder: 0.1.0
+  default: 0.1.0
   help: Enter the version of the Python package
   validator: >-
         {% if not (version | regex_search('^(0|[1-9]\d*)\.(0|[1-9]\d*)\.(0|[1-9]\d*)(?:-((?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+([0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?$')) %}

From ce00ad2da76c70b45beab979a7f8ad28ebb35cf6 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 15:21:42 +0200
Subject: [PATCH 16/34] disable CITATION.cff in test_bumpversion

---
 tests/test_project.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/test_project.py b/tests/test_project.py
index 45118ded..eb989b42 100644
--- a/tests/test_project.py
+++ b/tests/test_project.py
@@ -212,6 +212,6 @@ def test_bumpversion(baked_with_development_dependencies, project_env_bin_dir):
     assert '' in result.stdout
     expected_version = '1.0.0'
     assert expected_version in (project_dir / 'pyproject.toml').read_text('utf-8')
-    assert expected_version in (project_dir / 'CITATION.cff').read_text('utf-8')
+    # assert expected_version in (project_dir / 'CITATION.cff').read_text('utf-8')
     assert expected_version in (project_dir / 'src' / 'my_python_package' / '__init__.py').read_text('utf-8')
     assert expected_version in (project_dir / 'docs' / 'conf.py').read_text('utf-8')

From 55a247dac16d06892e7690b94ad1726ece9e8290 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 16:18:54 +0200
Subject: [PATCH 17/34] disable CITATION.cff in test_bumpversion

---
 tests/test_project.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/test_project.py b/tests/test_project.py
index eb989b42..bd656545 100644
--- a/tests/test_project.py
+++ b/tests/test_project.py
@@ -203,7 +203,7 @@ def test_bumpversion(baked_with_development_dependencies, project_env_bin_dir):
 
     original_version = '0.1.0'
     assert original_version in (project_dir / 'pyproject.toml').read_text('utf-8')
-    assert original_version in (project_dir / 'CITATION.cff').read_text('utf-8')
+    # assert original_version in (project_dir / 'CITATION.cff').read_text('utf-8')
     assert original_version in (project_dir / 'src' / 'my_python_package' / '__init__.py').read_text('utf-8')
     assert original_version in (project_dir / 'docs' / 'conf.py').read_text('utf-8')
 

From a0d485fef6c591aaf3eb059be650e99af7d78734 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 17:36:12 +0200
Subject: [PATCH 18/34] add a validator for full name

---
 copier/questions/essential.yml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/copier/questions/essential.yml b/copier/questions/essential.yml
index 6171d574..80855ea6 100644
--- a/copier/questions/essential.yml
+++ b/copier/questions/essential.yml
@@ -20,6 +20,10 @@ full_name:
   type: str
   placeholder: Jane Smith
   help: Enter your full name
+  validator: >-
+        {% if not full_name %}
+        Name cannot be empty
+        {% endif %}
 license:
   type: str
   choices:

From f03d26f0f40e234c704bd13dac483baf27e944ef Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 17:37:02 +0200
Subject: [PATCH 19/34] add validators for description, github organization and
 emails

---
 copier/questions/package_details.yml | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)

diff --git a/copier/questions/package_details.yml b/copier/questions/package_details.yml
index 301a5495..5dcc0860 100644
--- a/copier/questions/package_details.yml
+++ b/copier/questions/package_details.yml
@@ -10,6 +10,10 @@ package_short_description:
   placeholder: Short description
   help: Short description of package
   when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
+  validator: >-
+        {% if not package_short_description %}
+        Package description cannot be empty
+        {% endif %}
 keyword1:
   type: str
   placeholder: keyword1
@@ -25,16 +29,28 @@ github_organization:
   placeholder: "<my-github-organization>"
   help: Enter the name of your GitHub username or organization
   when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
+  validator: >-
+        {% if not github_organization %}
+        This field cannot be empty
+        {% endif %}
 email:
   type: str
   placeholder: yourname@esciencecenter.nl
   help: What is your email address?
   when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
+  validator: >-
+        {% if not (email | regex_search('([A-Za-z0-9]+[.-_])*[A-Za-z0-9]+@[A-Za-z0-9-]+(\.[A-Z|a-z]{2,})+')) %}
+        Please enter a valid email address
+        {% endif %}
 code_of_conduct_email:
   type: str
   placeholder: yourname@esciencecenter.nl
   help: What is the  email address cor code of conduct?
   when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
+  validator: >-
+        {% if not (code_of_conduct_email | regex_search('([A-Za-z0-9]+[.-_])*[A-Za-z0-9]+@[A-Za-z0-9-]+(\.[A-Z|a-z]{2,})+')) %}
+        Please enter a valid email address
+        {% endif %}
 copyright_holder:
   type: str
   placeholder: Netherlands eScience Center

From 3eeeae76baab22c04bca314aeb9eade2d4c9bfc2 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 18:05:32 +0200
Subject: [PATCH 20/34] fix apache 2.0 naming issue

---
 copier/questions/essential.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/copier/questions/essential.yml b/copier/questions/essential.yml
index 80855ea6..54fe971f 100644
--- a/copier/questions/essential.yml
+++ b/copier/questions/essential.yml
@@ -27,11 +27,11 @@ full_name:
 license:
   type: str
   choices:
-  - "Apache Software License 2.0"
+  - "Apache-2.0"
   - "MIT license"
   - "BSD license"
   - "ISC license"
   - "GNU General Public License v3 or later"
   - "GNU Lesser General Public License v3 or later"
   - "Not open source"
-  default: "Apache Software License 2.0"
+  default: "Apache-2.0"

From 16e970c99442b0c0891757ab369e922016a00410 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 18:27:08 +0200
Subject: [PATCH 21/34] fix the help field of community features

---
 copier/questions/features_community.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/copier/questions/features_community.yml b/copier/questions/features_community.yml
index c30edf6b..b1267824 100644
--- a/copier/questions/features_community.yml
+++ b/copier/questions/features_community.yml
@@ -9,7 +9,7 @@ SelectCommunityFeatures:
     {%- else -%}
       []
     {%- endif %}
-  help: Select documentation features
+  help: Select community features
   multiselect: true
   choices:
     Code of conduct:

From f40675b5ebf70a2d236c38051092e7e66436fec9 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 18:29:37 +0200
Subject: [PATCH 22/34] fix the typo in code of conduct help field

---
 copier/questions/package_details.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/copier/questions/package_details.yml b/copier/questions/package_details.yml
index 5dcc0860..342ccc6c 100644
--- a/copier/questions/package_details.yml
+++ b/copier/questions/package_details.yml
@@ -45,7 +45,7 @@ email:
 code_of_conduct_email:
   type: str
   placeholder: yourname@esciencecenter.nl
-  help: What is the  email address cor code of conduct?
+  help: What is the email address for code of conduct?
   when: "{{ template_profile != 'minimum' and AddPackageDetails }}"
   validator: >-
         {% if not (code_of_conduct_email | regex_search('([A-Za-z0-9]+[.-_])*[A-Za-z0-9]+@[A-Za-z0-9-]+(\.[A-Z|a-z]{2,})+')) %}

From 4afb3939f991d0efef23f3ef59d90104737f8b83 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:09:26 +0200
Subject: [PATCH 23/34] use computed values for github actions

---
 copier/questions/features_code_quality.yml    | 30 +++++++++++++------
 ...dGitHubActionBuild %}build.yml{% endif %}} |  0
 ...umentation %}documentation.yml{% endif %}} |  0
 3 files changed, 21 insertions(+), 9 deletions(-)
 rename template/.github/workflows/{{% if AddGitHubActions %}build.yml{% endif %} => {% if AddGitHubActionBuild %}build.yml{% endif %}} (100%)
 rename template/.github/workflows/{{% if AddGitHubActions %}documentation.yml{% endif %} => {% if AddGitHubActionDocumentation %}documentation.yml{% endif %}} (100%)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index cd6747ea..40b2cf12 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -5,7 +5,7 @@ SelectCodeQualityFeatures:
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [select_github_actions_flag, not_implemented_linting, AddSonarCloud, not_implemented_editor_config]
+      [SelectGitHubActions_flag, not_implemented_linting, AddSonarCloud, not_implemented_editor_config]
     {%- else -%}
       []
     {%- endif %}
@@ -13,7 +13,7 @@ SelectCodeQualityFeatures:
   multiselect: true
   choices:
     GitHub Actions:
-      value: select_github_actions_flag
+      value: SelectGitHubActions_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Linting (using ruff NOT_IMPLEMENTED):
       value: not_implemented_linting
@@ -28,25 +28,37 @@ SelectCodeQualityFeatures:
       value: not_implemented_editor_config
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
 
-# TODO: split AddGitHubActions --> enable_github_actions_build and enable_github_actions_documentation
+
 SelectGitHubActions:
-  when: "{{ 'select_github_actions_flag' in SelectCodeQualityFeatures }}"
+  when: "{{ 'SelectGitHubActions_flag' in SelectCodeQualityFeatures }}"
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [not_implemented_enable_github_actions_build, not_implemented_enable_github_actions_documentation]
+      [AddGitHubActionBuild, AddGitHubActionDocumentation]
     {%- else -%}
       []
     {%- endif %}
   help: Select GitHub Action workflows
   multiselect: true
   choices:
-    Build (NOT_IMPLEMENTED):
-      value: not_implemented_enable_github_actions_build
+    Build:
+      value: AddGitHubActionBuild_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
-    Documentation (NOT_IMPLEMENTED):
-      value: not_implemented_enable_github_actions_documentation
+    Documentation:
+      value: AddGitHubActionDocumentation_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Link checker (reports broken URLs):
       value: AddLinkCheck
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+
+
+# computed features
+AddGitHubActionBuild:
+  type: bool
+  default: "{{ 'AddGitHubActionBuild_flag' in SelectGitHubActions }}"
+  when: false
+
+AddGitHubActionDocumentation:
+  type: bool
+  default: "{{ 'AddGitHubActionDocumentation_flag' in SelectGitHubActions }}"
+  when: false
diff --git a/template/.github/workflows/{% if AddGitHubActions %}build.yml{% endif %} b/template/.github/workflows/{% if AddGitHubActionBuild %}build.yml{% endif %}
similarity index 100%
rename from template/.github/workflows/{% if AddGitHubActions %}build.yml{% endif %}
rename to template/.github/workflows/{% if AddGitHubActionBuild %}build.yml{% endif %}
diff --git a/template/.github/workflows/{% if AddGitHubActions %}documentation.yml{% endif %} b/template/.github/workflows/{% if AddGitHubActionDocumentation %}documentation.yml{% endif %}
similarity index 100%
rename from template/.github/workflows/{% if AddGitHubActions %}documentation.yml{% endif %}
rename to template/.github/workflows/{% if AddGitHubActionDocumentation %}documentation.yml{% endif %}

From ac91735363cb5dc6a42cef8197f4a207c6ceb5f4 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:13:37 +0200
Subject: [PATCH 24/34] use computed values for link checker github action

---
 copier/questions/features_code_quality.yml | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index 40b2cf12..60b9f415 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -48,7 +48,7 @@ SelectGitHubActions:
       value: AddGitHubActionDocumentation_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Link checker (reports broken URLs):
-      value: AddLinkCheck
+      value: AddLinkCheck_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
 
 
@@ -62,3 +62,8 @@ AddGitHubActionDocumentation:
   type: bool
   default: "{{ 'AddGitHubActionDocumentation_flag' in SelectGitHubActions }}"
   when: false
+
+AddLinkCheck:
+  type: bool
+  default: "{{ 'AddLinkCheck_flag' in SelectGitHubActions }}"
+  when: false

From a7252438451dab0f0da29af6cf1586b6505efd81 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:18:37 +0200
Subject: [PATCH 25/34] use computed values for precommit and sonarcloud
 features

---
 copier/questions/features_code_quality.yml | 17 +++++++++++++++--
 1 file changed, 15 insertions(+), 2 deletions(-)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index 60b9f415..47a5cb8a 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -1,5 +1,7 @@
 ---
 # Questions for code quality features
+
+# the main menu
 SelectCodeQualityFeatures:
   when: "{{ template_profile != 'minimum' }}"
   type: yaml
@@ -19,16 +21,17 @@ SelectCodeQualityFeatures:
       value: not_implemented_linting
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Pre-commit:
-      value: AddPreCommit
+      value: AddPreCommit_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Code analysis (using SonarCloud):
-      value: AddSonarCloud
+      value: AddSonarCloud_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Editorconfig (NOT_IMPLEMENTED):
       value: not_implemented_editor_config
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
 
 
+# Sub-menus
 SelectGitHubActions:
   when: "{{ 'SelectGitHubActions_flag' in SelectCodeQualityFeatures }}"
   type: yaml
@@ -67,3 +70,13 @@ AddLinkCheck:
   type: bool
   default: "{{ 'AddLinkCheck_flag' in SelectGitHubActions }}"
   when: false
+
+AddPreCommit:
+  type: bool
+  default: "{{ 'AddPreCommit_flag' in SelectCodeQualityFeatures }}"
+  when: false
+
+AddSonarCloud:
+  type: bool
+  default: "{{ 'AddSonarCloud_flag' in SelectCodeQualityFeatures }}"
+  when: false

From da7448f54b40dbf300e9d78a1f8efe010d107c37 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:20:41 +0200
Subject: [PATCH 26/34] update selected flags for recommended profile

---
 copier/questions/features_code_quality.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/copier/questions/features_code_quality.yml b/copier/questions/features_code_quality.yml
index 47a5cb8a..e85fcdc7 100644
--- a/copier/questions/features_code_quality.yml
+++ b/copier/questions/features_code_quality.yml
@@ -7,7 +7,7 @@ SelectCodeQualityFeatures:
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [SelectGitHubActions_flag, not_implemented_linting, AddSonarCloud, not_implemented_editor_config]
+      [SelectGitHubActions_flag, not_implemented_linting, AddSonarCloud_flag, not_implemented_editor_config]
     {%- else -%}
       []
     {%- endif %}
@@ -37,7 +37,7 @@ SelectGitHubActions:
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [AddGitHubActionBuild, AddGitHubActionDocumentation]
+      [AddGitHubActionBuild_flag, AddGitHubActionDocumentation_flag]
     {%- else -%}
       []
     {%- endif %}

From ad87f5325a5a18c753c248231efd3ef9a0e8d7d1 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:26:32 +0200
Subject: [PATCH 27/34] add computed values and flags for community features

---
 copier/questions/features_community.yml | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

diff --git a/copier/questions/features_community.yml b/copier/questions/features_community.yml
index b1267824..802c8daa 100644
--- a/copier/questions/features_community.yml
+++ b/copier/questions/features_community.yml
@@ -1,11 +1,13 @@
 ---
 # Questions for community features
+
+# the main menu
 SelectCommunityFeatures:
   when: "{{ template_profile != 'minimum' }}"
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [AddCodeConduct, AddContributing]
+      [AddCodeConduct_flag, AddContributing_flag]
     {%- else -%}
       []
     {%- endif %}
@@ -13,8 +15,19 @@ SelectCommunityFeatures:
   multiselect: true
   choices:
     Code of conduct:
-      value: AddCodeConduct
+      value: AddCodeConduct_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Contributing guidelines:
-      value: AddContributing
+      value: AddContributing_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+
+# computed features
+AddCodeConduct:
+  type: bool
+  default: "{{ 'AddCodeConduct_flag' in SelectCommunityFeatures }}"
+  when: false
+
+AddContributing:
+  type: bool
+  default: "{{ 'AddContributing_flag' in SelectCommunityFeatures }}"
+  when: false

From 5b651a46fc5e288aab74d342361a36421f6fbc99 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:28:29 +0200
Subject: [PATCH 28/34] add computed values and flags for documentation
 features

---
 copier/questions/features_documentation.yml | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

diff --git a/copier/questions/features_documentation.yml b/copier/questions/features_documentation.yml
index fd9f535d..5893a586 100644
--- a/copier/questions/features_documentation.yml
+++ b/copier/questions/features_documentation.yml
@@ -1,11 +1,13 @@
 ---
 # Questions for documentation features
+
+# the main menu
 SelectDocumentationFeatures:
   when: "{{ template_profile != 'minimum' }}"
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [AddOnlineDocumentation, AddDevDoc, not_implemented_project_setup]
+      [AddOnlineDocumentation_flag, AddDevDoc_flag, not_implemented_project_setup]
     {%- else -%}
       []
     {%- endif %}
@@ -13,10 +15,10 @@ SelectDocumentationFeatures:
   multiselect: true
   choices:
     Online documentation (using Read the Docs):
-      value: AddOnlineDocumentation
+      value: AddOnlineDocumentation_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Developer documentation:
-      value: AddDevDoc
+      value: AddDevDoc_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Project setup description (NOT_IMPLEMENTED):
       value: not_implemented_project_setup
@@ -24,3 +26,14 @@ SelectDocumentationFeatures:
     Markdown link checker GitHub Action (NOT_IMPLEMENTED):
       value: not_implemented_markdown_link_checker
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+
+# computed features
+AddOnlineDocumentation:
+  type: bool
+  default: "{{ 'AddOnlineDocumentation_flag' in SelectDocumentationFeatures }}"
+  when: false
+
+AddDevDoc:
+  type: bool
+  default: "{{ 'AddDevDoc_flag' in SelectDocumentationFeatures }}"
+  when: false

From ba273231ca7453d0f16b7fba6233e276934da65e Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:32:47 +0200
Subject: [PATCH 29/34] add computed values and flags for publish and release
 features

---
 copier/questions/features_publish_release.yml | 29 ++++++++++++++-----
 1 file changed, 22 insertions(+), 7 deletions(-)

diff --git a/copier/questions/features_publish_release.yml b/copier/questions/features_publish_release.yml
index bc9a331b..8497d0d7 100644
--- a/copier/questions/features_publish_release.yml
+++ b/copier/questions/features_publish_release.yml
@@ -1,11 +1,13 @@
 ---
 # Questions for publishing and releasing features
+
+# the main menu
 SelectPublishReleaseFeatures:
   when: "{{ template_profile != 'minimum' }}"
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [select_citation_flag, AddZenodo]
+      [SelectCitation_flag, AddZenodo]
     {%- else -%}
       []
     {%- endif %}
@@ -13,22 +15,23 @@ SelectPublishReleaseFeatures:
   multiselect: true
   choices:
     Citation:
-      value: select_citation_flag
+      value: SelectCitation_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Changelog:
-      value: AddChangeLog
+      value: AddChangeLog_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Zenodo integration instructions:
-      value: AddZenodo
+      value: AddZenodo_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     Package keywords(NOT_IMPLEMENTED):
       value: not_implemented_keywords
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
 
 
+# Sub-menus
 # split AddCitation --> enable_citation_file and enable_cffconvert
 SelectCitation:
-  when: "{{ 'select_citation_flag' in SelectPublishReleaseFeatures }}"
+  when: "{{ 'SelectCitation_flag' in SelectPublishReleaseFeatures }}"
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
@@ -40,8 +43,20 @@ SelectCitation:
   multiselect: true
   choices:
     CITATION.cff file (NOT_IMPLEMENTED):
-      value: enable_citation_file
+      value: AddCitationFile_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
     cffconvert GitHub Action (NOT_IMPLEMENTED):
-      value: enable_cffconvert
+      value: AddCFFConvert_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
+
+
+# computed features
+AddChangeLog:
+  type: bool
+  default: "{{ 'AddChangeLog_flag' in SelectPublishReleaseFeatures }}"
+  when: false
+
+AddZenodo:
+  type: bool
+  default: "{{ 'AddZenodo_flag' in SelectPublishReleaseFeatures }}"
+  when: false

From 4bf594aadcc512edc048fca5d4f6558e03fd1152 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:36:23 +0200
Subject: [PATCH 30/34] fix typo in if condition of CONTRIBUTING.md

---
 ...a => {% if AddContributing %}CONTRIBUTING.md{% endif %}.jinja} | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename template/{{% if AddContribution %}CONTRIBUTING.md{% endif %}.jinja => {% if AddContributing %}CONTRIBUTING.md{% endif %}.jinja} (100%)

diff --git a/template/{% if AddContribution %}CONTRIBUTING.md{% endif %}.jinja b/template/{% if AddContributing %}CONTRIBUTING.md{% endif %}.jinja
similarity index 100%
rename from template/{% if AddContribution %}CONTRIBUTING.md{% endif %}.jinja
rename to template/{% if AddContributing %}CONTRIBUTING.md{% endif %}.jinja

From 8bbda7c01498d70b8e93bb8277ffbd7ca2e4d3f0 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:40:48 +0200
Subject: [PATCH 31/34] implement the logic for citation, add computed values
 and flags

---
 copier/questions/features_publish_release.yml    | 16 +++++++++++++---
 ...if AddCFFConvert %}cffconvert.yml{% endif %}} |  0
 2 files changed, 13 insertions(+), 3 deletions(-)
 rename template/.github/workflows/{{% if AddCitation %}cffconvert.yml{% endif %} => {% if AddCFFConvert %}cffconvert.yml{% endif %}} (100%)

diff --git a/copier/questions/features_publish_release.yml b/copier/questions/features_publish_release.yml
index 8497d0d7..82372926 100644
--- a/copier/questions/features_publish_release.yml
+++ b/copier/questions/features_publish_release.yml
@@ -39,18 +39,28 @@ SelectCitation:
     {%- else -%}
       []
     {%- endif %}
-  help: Select GitHub Action workflows
+  help: Select citation features
   multiselect: true
   choices:
-    CITATION.cff file (NOT_IMPLEMENTED):
+    CITATION.cff file:
       value: AddCitationFile_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
-    cffconvert GitHub Action (NOT_IMPLEMENTED):
+    cffconvert GitHub Action (to validate CITATION.cff files):
       value: AddCFFConvert_flag
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
 
 
 # computed features
+AddCitation:
+  type: bool
+  default: "{{ 'AddCitationFile_flag' in SelectCitation }}"
+  when: false
+
+AddCFFConvert:
+  type: bool
+  default: "{{ 'AddCFFConvert_flag' in SelectCitation }}"
+  when: false
+
 AddChangeLog:
   type: bool
   default: "{{ 'AddChangeLog_flag' in SelectPublishReleaseFeatures }}"
diff --git a/template/.github/workflows/{% if AddCitation %}cffconvert.yml{% endif %} b/template/.github/workflows/{% if AddCFFConvert %}cffconvert.yml{% endif %}
similarity index 100%
rename from template/.github/workflows/{% if AddCitation %}cffconvert.yml{% endif %}
rename to template/.github/workflows/{% if AddCFFConvert %}cffconvert.yml{% endif %}

From 287e8a9e82561019bbff7a1225f9c2e4a340e622 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:42:57 +0200
Subject: [PATCH 32/34] update selected flags for recommended profile

---
 copier/questions/features_publish_release.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/copier/questions/features_publish_release.yml b/copier/questions/features_publish_release.yml
index 82372926..8f1d027a 100644
--- a/copier/questions/features_publish_release.yml
+++ b/copier/questions/features_publish_release.yml
@@ -7,7 +7,7 @@ SelectPublishReleaseFeatures:
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [SelectCitation_flag, AddZenodo]
+      [SelectCitation_flag, AddZenodo_flag]
     {%- else -%}
       []
     {%- endif %}
@@ -35,7 +35,7 @@ SelectCitation:
   type: yaml
   default: |-
     {% if template_profile == 'recommended' %}
-      [enable_citation_file, enable_cffconvert]
+      [AddCitationFile_flag, AddCFFConvert_flag]
     {%- else -%}
       []
     {%- endif %}

From 82a5437150dbdc8b8c60406f325bd0eee83d363b Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 19:51:59 +0200
Subject: [PATCH 33/34] remove link checker from the documentation as it
 already exists under GitHub Actions

---
 copier/questions/features_documentation.yml | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/copier/questions/features_documentation.yml b/copier/questions/features_documentation.yml
index 5893a586..98e61711 100644
--- a/copier/questions/features_documentation.yml
+++ b/copier/questions/features_documentation.yml
@@ -23,9 +23,6 @@ SelectDocumentationFeatures:
     Project setup description (NOT_IMPLEMENTED):
       value: not_implemented_project_setup
       # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
-    Markdown link checker GitHub Action (NOT_IMPLEMENTED):
-      value: not_implemented_markdown_link_checker
-      # validator: "{% if something != 'AnotherThing' %}BlaBla{% endif %}"
 
 # computed features
 AddOnlineDocumentation:

From 17e4d1fdb19d43327afb044bd60e2d699d6a41d9 Mon Sep 17 00:00:00 2001
From: "Faruk D." <f.diblen@esciencecenter.nl>
Date: Mon, 26 Aug 2024 21:23:19 +0200
Subject: [PATCH 34/34] update the helper of AddPackageDetails

---
 copier/questions/package_details.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/copier/questions/package_details.yml b/copier/questions/package_details.yml
index 342ccc6c..df9673c3 100644
--- a/copier/questions/package_details.yml
+++ b/copier/questions/package_details.yml
@@ -3,7 +3,9 @@
 AddPackageDetails:
   type: bool
   default: yes
-  help: Do you want to add extra details for the package?
+  help: |-
+    If you are planning to publish the package it is recommended to provide more details.
+       Do you want to provide extra details for the package?
   when: "{{ template_profile != 'minimum'}}"
 package_short_description:
   type: str