From 9887965b0fe4355747a754ed4bfb66c6c27df0e6 Mon Sep 17 00:00:00 2001 From: Wenqi Li Date: Thu, 22 Apr 2021 12:55:17 +0100 Subject: [PATCH 1/2] fixes plot Signed-off-by: Wenqi Li --- 3d_registration/paired_lung_ct.ipynb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/3d_registration/paired_lung_ct.ipynb b/3d_registration/paired_lung_ct.ipynb index f3e0c891e7..36cf2cb371 100644 --- a/3d_registration/paired_lung_ct.ipynb +++ b/3d_registration/paired_lung_ct.ipynb @@ -788,7 +788,7 @@ " plt.imshow(val_moving_image[:, :, depth], cmap=\"gray\")\n", " plt.subplot(1, 6, 2)\n", " plt.title(f\"moving_label {i} d={depth}\")\n", - " plt.imshow(moving_label[:, :, depth])\n", + " plt.imshow(val_moving_label[:, :, depth])\n", " plt.subplot(1, 6, 3)\n", " plt.title(f\"fixed_image {i} d={depth}\")\n", " plt.imshow(fixed_image[:, :, depth], cmap=\"gray\")\n", @@ -821,7 +821,6 @@ "cell_type": "code", "execution_count": null, "metadata": { - "collapsed": false, "pycharm": { "name": "#%%\n" } From 4f4320da1635561878e37fcb4252d008bd694a7c Mon Sep 17 00:00:00 2001 From: Wenqi Li Date: Wed, 5 May 2021 08:20:37 +0100 Subject: [PATCH 2/2] fixes #207 Signed-off-by: Wenqi Li --- modules/interpretability/class_lung_lesion.ipynb | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/modules/interpretability/class_lung_lesion.ipynb b/modules/interpretability/class_lung_lesion.ipynb index 4b5db35e02..4aaf5d69ce 100644 --- a/modules/interpretability/class_lung_lesion.ipynb +++ b/modules/interpretability/class_lung_lesion.ipynb @@ -282,13 +282,16 @@ " ]\n", ")\n", "\n", + "persistent_cache = os.path.join(root_dir, \"persistent_cache\")\n", "train_ds = monai.data.PersistentDataset(\n", - " data=train_files, transform=train_transforms\n", + " data=train_files, transform=train_transforms, cache_dir=persistent_cache\n", ")\n", "train_loader = monai.data.DataLoader(\n", " train_ds, batch_size=2, shuffle=True, num_workers=2, pin_memory=True\n", ")\n", - "val_ds = monai.data.PersistentDataset(data=val_files, transform=val_transforms)\n", + "val_ds = monai.data.PersistentDataset(\n", + " data=val_files, transform=val_transforms, cache_dir=persistent_cache\n", + ")\n", "val_loader = monai.data.DataLoader(\n", " val_ds, batch_size=2, num_workers=2, pin_memory=True\n", ")" @@ -759,7 +762,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.5" + "version": "3.7.10" } }, "nbformat": 4,