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class_lung_lesion.ipynb testing error #207
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Description
Describe the bug
from the ci tests because of Project-MONAI/MONAI#2137:
Running ./modules/interpretability/class_lung_lesion.ipynb
Checking PEP8 compliance...
Running notebook...
Before:
"max_epochs = 100\n",
After:
"max_epochs = 1\n",
Before:
"val_interval = 1\n",
After:
"val_interval = 1\n",
Executing: 0%| | 0/20 [00:00<?, ?cell/s]
Executing: 5%|▌ | 1/20 [00:00<00:18, 1.02cell/s]
Executing: 10%|█ | 2/20 [00:04<00:32, 1.79s/cell]
Executing: 15%|█▌ | 3/20 [00:07<00:34, 2.02s/cell]
Executing: 20%|██ | 4/20 [00:19<01:22, 5.13s/cell]
Executing: 45%|████▌ | 9/20 [00:19<00:39, 3.61s/cell]
Executing: 45%|████▌ | 9/20 [00:21<00:25, 2.36s/cell]
Traceback (most recent call last):
File "/opt/conda/bin/papermill", line 8, in <module>
sys.exit(papermill())
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/opt/conda/lib/python3.8/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/click/decorators.py", line 21, in new_func
return f(get_current_context(), *args, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/papermill/cli.py", line 250, in papermill
execute_notebook(
File "/opt/conda/lib/python3.8/site-packages/papermill/execute.py", line 122, in execute_notebook
raise_for_execution_errors(nb, output_path)
File "/opt/conda/lib/python3.8/site-packages/papermill/execute.py", line 234, in raise_for_execution_errors
raise error
papermill.exceptions.PapermillExecutionError:
---------------------------------------------------------------------------
Exception encountered at "In [6]":
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-6-8592e0c07ebc> in <module>
39 )
40
---> 41 train_ds = monai.data.PersistentDataset(
42 data=train_files, transform=train_transforms
43 )
TypeError: __init__() missing 1 required positional argument: 'cache_dir'
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